Selected article for: "International license and SARS sequence"
Author: Xianding Deng; Wei Gu; Scot Federman; Louis Du Plessis; Oliver Pybus; Nuno Faria; Candace Wang; Guixia Yu; Chao-Yang Pan; Hugo Guevara; Alicia Sotomayor-Gonzalez; Kelsey Zorn; Allan Gopez; Venice Servellita; Elaine Hsu; Steve Miller; Trevor Bedford; Alexander Greninger; Pavitra Roychoudhury; Michael Famulare; Helen Y Chu; Jay Shendure; Lea Starita; Catie Anderson; Karthik Gangavarapu; Mark Zeller; Emily Spencer; Kristian Andersen; Duncan MacCannell; Suxiang Tong; Gregory Armstrong; Clinton Paden; Yan Li; Ying Zhang; Scott Morrow; Matthew Willis; Bela Matyas; Sundari Mase; Olivia Kasirye; Maggie Park; Curtis Chan; Alexander Yu; Shua Chai; Elsa Villarino; Brandon Bonin; Debra Wadford; Charles Y Chiu
Title: A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage
  • Document date: 2020_3_30
    • ID: cbc98t7x_50
    Snippet: is the (which was not peer-reviewed) The copyright holder for this preprint . https://doi.org/10.1101/2020.03. 27.20044925 doi: medRxiv preprint Figure 3 : Multiple sequence alignment of all SARS-CoV-2 genomes reported across 9 counties and 1 cruise ship. Single nucleotide variants (SNVs) with respect to the reference strain (NC_045512) are shown in vertical red lines. Cases that are grouped into the WA1 cluster (defined as containing the C8782T,.....
    Document: is the (which was not peer-reviewed) The copyright holder for this preprint . https://doi.org/10.1101/2020.03. 27.20044925 doi: medRxiv preprint Figure 3 : Multiple sequence alignment of all SARS-CoV-2 genomes reported across 9 counties and 1 cruise ship. Single nucleotide variants (SNVs) with respect to the reference strain (NC_045512) are shown in vertical red lines. Cases that are grouped into the WA1 cluster (defined as containing the C8782T, C18060T, T28144C SNVs) include the first identified case of COVID-19 infection (WA1) in the United States on January 15 th , 2020, 9 passengers and crew members aboard the Grand Princess cruise ship, and 4 Northern California counties. Two additional SNVs, C17747T and A17858G, are common to SARS-CoV-2 viruses associated with the Grand Princess cruise ship. Single SNV variants C9924T and G29711T define groups of infected individuals in the Solano County (UC2, UC3, and UC4) and Santa Clara County (UC14, UC16, and UC17) clusters, respectively. 13 er th 4, . CC-BY-NC-ND 4.0 International license It is made available under a author/funder, who has granted medRxiv a license to display the preprint in perpetuity.

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