Selected article for: "japanese encephalitis virus and JEV japanese encephalitis virus"
Author: Wang, Shiliang; Sundaram, Jaideep P.; Stockwell, Timothy B.
Title: VIGOR extended to annotate genomes for additional 12 different viruses
  • Document date: 2012_6_4
    • ID: wd3ir3wg_5
    Snippet: In addition to the viruses listed earlier, measles virus, mumps virus, rubella virus, norovirus, metapneumovirus (MPV), respiratory syncytial virus (RSV), human parainfluenza virus 1 (hPIV-1) and 3 (hPIV-3), Venezuelan equine encephalitis virus (VEEV), yellow fever virus (YFV) and Japanese encephalitis virus (JEV) are also being sequenced by GSCID at JCVI. In order to validate and accurately annotate these genomes, viral species-specific protein .....
    Document: In addition to the viruses listed earlier, measles virus, mumps virus, rubella virus, norovirus, metapneumovirus (MPV), respiratory syncytial virus (RSV), human parainfluenza virus 1 (hPIV-1) and 3 (hPIV-3), Venezuelan equine encephalitis virus (VEEV), yellow fever virus (YFV) and Japanese encephalitis virus (JEV) are also being sequenced by GSCID at JCVI. In order to validate and accurately annotate these genomes, viral species-specific protein databases have been created and VIGOR's capabilities were enhanced to detect the new species-specific gene features, such as RNA editing and stop codon read-through. The accuracy of gene predictions of this enhanced version has been evaluated against the same viral annotations available at NCBI. VIGOR was also extended to predict genes correctly for related viruses, such as alphavirus and Sendai virus.

    Search related documents:
    Co phrase search for related documents
    • encephalitis virus and equine encephalitis: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
    • encephalitis virus and equine encephalitis virus: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
    • encephalitis virus and fever virus: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
    • encephalitis virus and gene feature: 1
    • encephalitis virus and gene prediction: 1
    • encephalitis virus and human parainfluenza virus: 1
    • encephalitis virus and japanese encephalitis virus: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
    • equine encephalitis and fever virus: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
    • equine encephalitis and gene feature: 1
    • equine encephalitis and gene prediction: 1
    • equine encephalitis and human parainfluenza virus: 1
    • equine encephalitis and japanese encephalitis virus: 1, 2, 3, 4, 5, 6, 7, 8
    • equine encephalitis virus and fever virus: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
    • equine encephalitis virus and gene feature: 1
    • equine encephalitis virus and gene prediction: 1
    • equine encephalitis virus and japanese encephalitis virus: 1, 2, 3, 4, 5, 6, 7, 8
    • fever virus and gene feature: 1
    • fever virus and gene predict: 1
    • fever virus and human parainfluenza virus: 1, 2, 3, 4, 5