Author: Ramya Rangan; Ivan N. Zheludev; Rhiju Das
Title: RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses Document date: 2020_3_28
ID: kjeqdse5_13
Snippet: scanned the SARS-CoV-2 reference genome in windows of length 120 nucleotides sliding by 40 nucleotides, and for each window, we predicted the base-pair probability matrix with Contrafold 2.0, using these probabilities to assemble average single-nucleotide base pairing probabilities across the genome. In Figure 3 , we display the 76 stretches of the genome of length at least 15 nucleotides where every base has average base-pairing probability at m.....
Document: scanned the SARS-CoV-2 reference genome in windows of length 120 nucleotides sliding by 40 nucleotides, and for each window, we predicted the base-pair probability matrix with Contrafold 2.0, using these probabilities to assemble average single-nucleotide base pairing probabilities across the genome. In Figure 3 , we display the 76 stretches of the genome of length at least 15 nucleotides where every base has average base-pairing probability at most 0.4.
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