Author: Theis, Corinna; Reeder, Jens; Giegerich, Robert
Title: KnotInFrame: prediction of -1 ribosomal frameshift events Document date: 2008_9_27
ID: 4ov0j2u3_22
Snippet: Definitions. Let s be a DNA sequence of length n. We require neither a start codon nor frame information. s i; j ½ is a substring of s starting at position i and ending at position j, and s½i; n is called a suffix of s. A slippery sequence in s is a substring s½i; i þ 6 that matches the consensus slippery motif of the form X XXY YYZ, where the spacer marks the zero-frame codons, XXX stands for any three identical nucleotides, YYY for either t.....
Document: Definitions. Let s be a DNA sequence of length n. We require neither a start codon nor frame information. s i; j ½ is a substring of s starting at position i and ending at position j, and s½i; n is called a suffix of s. A slippery sequence in s is a substring s½i; i þ 6 that matches the consensus slippery motif of the form X XXY YYZ, where the spacer marks the zero-frame codons, XXX stands for any three identical nucleotides, YYY for either three As or three T/Us and Z for any nucleotide.
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