Author: Alba Grifoni; John Sidney; Yun Zhang; Richard H Scheuermann; Bjoern Peters; Alessandro Sette
Title: Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence homology- and bioinformatic-based predictions Document date: 2020_2_20
ID: 8p1agcm2_8
Snippet: Next, we aligned the SARS-CoV B cell epitope region sequences to the 2019-nCoV sequence to calculate the percentage identity between each of the SARS-CoV dominant regions and 2019-nCoV ( Table 2) . Of the ten regions identified, six had 90% or more identity with 2019-nCoV, two were between 80-89% identical, and two had lower but still appreciable homology (69% and 78%). Because of the overall high level of sequence similarity of SARS-CoV and 2019.....
Document: Next, we aligned the SARS-CoV B cell epitope region sequences to the 2019-nCoV sequence to calculate the percentage identity between each of the SARS-CoV dominant regions and 2019-nCoV ( Table 2) . Of the ten regions identified, six had 90% or more identity with 2019-nCoV, two were between 80-89% identical, and two had lower but still appreciable homology (69% and 78%). Because of the overall high level of sequence similarity of SARS-CoV and 2019-nCoV we infer that the same regions that are dominant in SARS-CoV have high likelihood to also be dominant in 2019-nCoV, even if the actual sequences are different.
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