Author: Pandya, Gagan A.; Holmes, Michael H.; Sunkara, Sirisha; Sparks, Andrew; Bai, Yun; Verratti, Kathleen; Saeed, Kelly; Venepally, Pratap; Jarrahi, Behnam; Fleischmann, Robert D.; Peterson, Scott N.
Title: A bioinformatic filter for improved base-call accuracy and polymorphism detection using the Affymetrix GeneChip® whole-genome resequencing platform Document date: 2007_11_15
ID: 16tii0ha_29
Snippet: A schematic representation of the chip design used to represent the F. tularensis genome is depicted in Figure 5 . The F. tularensis LVS genome sequence defined our reference and was represented on chips A-E and the majority of chip F. Unique sequences present in strain SCHU S4, together with two plasmid sequences, were added to the remainder of chip F. Our chip design, based on sequence information from two strains, enables coverage of a large n.....
Document: A schematic representation of the chip design used to represent the F. tularensis genome is depicted in Figure 5 . The F. tularensis LVS genome sequence defined our reference and was represented on chips A-E and the majority of chip F. Unique sequences present in strain SCHU S4, together with two plasmid sequences, were added to the remainder of chip F. Our chip design, based on sequence information from two strains, enables coverage of a large number of strains. Approximately 91% of the F. tularensis double-stranded unique genome can be resequenced with this design from strains belonging to holarctica (type B) and tularensis (type A) subtypes.
Search related documents:
Co phrase search for related documents- chip design and large number: 1
- double strand and genome sequence: 1, 2
- double strand and plasmid sequence: 1, 2
- genome sequence and large number: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- genome sequence and LVS genome sequence: 1, 2, 3
- genome sequence and plasmid sequence: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
- genome sequence and sequence information: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- genome sequence and strain sequence information: 1, 2, 3
- genome sequence and tularensis genome: 1, 2
- large number and sequence information: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
- large number and strain large number: 1, 2, 3, 4, 5
- LVS genome sequence and sequence information: 1
- LVS genome sequence and strain sequence information: 1
- plasmid sequence and tularensis genome: 1
- sequence information and strain sequence information: 1, 2, 3, 4, 5, 6
Co phrase search for related documents, hyperlinks ordered by date