Author: Pandya, Gagan A.; Holmes, Michael H.; Sunkara, Sirisha; Sparks, Andrew; Bai, Yun; Verratti, Kathleen; Saeed, Kelly; Venepally, Pratap; Jarrahi, Behnam; Fleischmann, Robert D.; Peterson, Scott N.
Title: A bioinformatic filter for improved base-call accuracy and polymorphism detection using the Affymetrix GeneChip® whole-genome resequencing platform Document date: 2007_11_15
ID: 16tii0ha_27
Snippet: The candidate SNPs or unexpected base calls (290) were validated for the reference LVS strain by ABI sequencing. Unexpected SNP calls as well as a subset of false-negative calls (562 total) for the SCHU S4 strain were also validated. Primer pairs flanking miscalled or SNP bases were designed containing M13 universal forward-or reverse.....
Document: The candidate SNPs or unexpected base calls (290) were validated for the reference LVS strain by ABI sequencing. Unexpected SNP calls as well as a subset of false-negative calls (562 total) for the SCHU S4 strain were also validated. Primer pairs flanking miscalled or SNP bases were designed containing M13 universal forward-or reverse
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