Author: Bahir, Iris; Fromer, Menachem; Prat, Yosef; Linial, Michal
Title: Viral adaptation to host: a proteome-based analysis of codon usage and amino acid preferences Document date: 2009_10_13
ID: 629kl04a_20
Snippet: Under the scheme outlined above, we consider the ranked distance of each pair of viruses and host groups relative to the L 2 variability among the entire set of tested pairs (36 pairs, covering all 6 major taxonomical groups). Figure The relative codon usage of the six triplets that code for Arginine (R) and Leucine (L) in human-infecting viruses (yellow) and viruses that infect non-human mammals (blue). Such data, when combined for all codons (e.....
Document: Under the scheme outlined above, we consider the ranked distance of each pair of viruses and host groups relative to the L 2 variability among the entire set of tested pairs (36 pairs, covering all 6 major taxonomical groups). Figure The relative codon usage of the six triplets that code for Arginine (R) and Leucine (L) in human-infecting viruses (yellow) and viruses that infect non-human mammals (blue). Such data, when combined for all codons (excluding triplets for Tryptophan and Methionine), produce a vector of 59 codon frequencies that is subsequently used for quantifying the distance between any pair of virus and host groups.
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