Author: Gomez, D.E.; Arroyo, L.G.; Costa, M.C.; Viel, L.; Weese, J.S.
Title: Characterization of the Fecal Bacterial Microbiota of Healthy and Diarrheic Dairy Calves Document date: 2017_4_7
ID: 2vraae5h_11
Snippet: Subsampling was completed to normalize sequence number by random selection of a number of sequences that corresponded to the lowest number of reads for any sample. Sampling coverage was assessed by Good's coverage value. Diversity, evenness, and richness were calculated by the inverse Simpson's, Shannon's evenness, and Chao1 indexes, respectively, and comparison between groups was made by Wilcoxon rank sum test. The core microbiota was investigat.....
Document: Subsampling was completed to normalize sequence number by random selection of a number of sequences that corresponded to the lowest number of reads for any sample. Sampling coverage was assessed by Good's coverage value. Diversity, evenness, and richness were calculated by the inverse Simpson's, Shannon's evenness, and Chao1 indexes, respectively, and comparison between groups was made by Wilcoxon rank sum test. The core microbiota was investigated by identifying genera with relative abundances of at least 1% in all samples from a group.
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