Author: Xu, Zhao; Hao, Bailin
Title: CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes Document date: 2009_7_1
ID: 02opdk0m_25
Snippet: Parameters are set in the project page. In the CV approach, length K of the oligopeptides or oligonucleotides controls the resolution of the method and is important for getting good results. Our previous studies have shown that better results may be achieved by setting K to 5 for virus (3, 4) , 5 or 6 for prokaryotes (1,7) and 6 or 7 for fungi. Our further study on how to choose K will make the subject of a separate publication. The sequence type.....
Document: Parameters are set in the project page. In the CV approach, length K of the oligopeptides or oligonucleotides controls the resolution of the method and is important for getting good results. Our previous studies have shown that better results may be achieved by setting K to 5 for virus (3, 4) , 5 or 6 for prokaryotes (1,7) and 6 or 7 for fungi. Our further study on how to choose K will make the subject of a separate publication. The sequence type (DNA or protein) and email to receive the results are to be entered in the project page. For DNA sequences K may be chosen from 6 to 18 with increment 3. For protein sequences, which are recommended, K = 3-7. If an email is entered, the web page may be safely closed after the project gets running.
Search related documents:
Co phrase search for related documents- CV approach and previous study: 1
- dna sequence and method resolution: 1
- dna sequence and previous study: 1, 2, 3, 4, 5, 6
- dna sequence and protein dna: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50
- dna sequence and protein sequence: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43
- dna sequence and sequence type: 1, 2, 3, 4, 5, 6
- good result and protein sequence: 1
- good result and web page: 1
- method resolution and previous study: 1, 2
Co phrase search for related documents, hyperlinks ordered by date