Author: MYRRHA, Luciana Wanderley; SILVA, Fernanda Miquelitto Figueira; VIDIGAL, Pedro Marcus Pereira; RESENDE, Maurício; BRESSAN, Gustavo Costa; FIETTO, Juliana Lopes Rangel; SANTOS, Marcus Rebouças; SILVA, Laura Morais Nascimento; ASSAO, Viviane Sisdelli; SILVA-JÚNIOR, Abelardo; de ALMEIDA, Márcia Rogéria
Title: Feline coronavirus isolates from a part of Brazil: insights into molecular epidemiology and phylogeny inferred from the 7b gene Document date: 2019_8_23
ID: 1s25r3o0_13
Snippet: For each test, the convergence of the parameters (including the estimated mutation rate) was analyzed in TRACER v1.5.0, and the chains reached a stationary distribution after 10,000,000 generations. The marginal likelihoods obtained in each test were compared by Bayes factor calculations [29] with 1,000 bootstrap replicates. The test with the highest Bayes factor corresponds to the best-fit clock model and a better estimation of the mutation rate.....
Document: For each test, the convergence of the parameters (including the estimated mutation rate) was analyzed in TRACER v1.5.0, and the chains reached a stationary distribution after 10,000,000 generations. The marginal likelihoods obtained in each test were compared by Bayes factor calculations [29] with 1,000 bootstrap replicates. The test with the highest Bayes factor corresponds to the best-fit clock model and a better estimation of the mutation rate. Following this, 1% of the trees generated were burned to produce a consensus time-tree ( Fig. 2) using TreeAnnotator v1.7.2 [7] .
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