Selected article for: "phylogenetic tree and tree reconstruction"
Author: Pickett, Brett E.; Sadat, Eva L.; Zhang, Yun; Noronha, Jyothi M.; Squires, R. Burke; Hunt, Victoria; Liu, Mengya; Kumar, Sanjeev; Zaremba, Sam; Gu, Zhiping; Zhou, Liwei; Larson, Christopher N.; Dietrich, Jonathan; Klem, Edward B.; Scheuermann, Richard H.
Title: ViPR: an open bioinformatics database and analysis resource for virology research
  • Document date: 2011_10_17
    • ID: 48ym7eti_22
    Snippet: Phylogenetic trees can be calculated on the ViPR server using sequence records selected from a query result, an existing working set or uploaded to the system through a web interface. Phylogenetic tree reconstructions can then be saved in the Workbench or downloaded in either Newick or phyloXML format (31) . For the current use case, a FastME phylogenetic tree is constructed with the desired sequences by choosing the 'Quick Tree' option on the 'G.....
    Document: Phylogenetic trees can be calculated on the ViPR server using sequence records selected from a query result, an existing working set or uploaded to the system through a web interface. Phylogenetic tree reconstructions can then be saved in the Workbench or downloaded in either Newick or phyloXML format (31) . For the current use case, a FastME phylogenetic tree is constructed with the desired sequences by choosing the 'Quick Tree' option on the 'Generate Phylogenetic Tree' page. PhyML and RAxML are also provided as alternative phylogenetic tree reconstruction algorithms.

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