Author: Bahir, Iris; Fromer, Menachem; Prat, Yosef; Linial, Michal
Title: Viral adaptation to host: a proteome-based analysis of codon usage and amino acid preferences Document date: 2009_10_13
ID: 629kl04a_23
Snippet: Next, we tested the similarity between virus, host amino acid, and codon preferences, as a measure for coherent adaptation of viruses with respect to their host taxonomical groups ( Figure 4B, right) . Interestingly, viruses that infect humans are not only adapted to the human host, but are also similar in codon preference to host groups comprising mammals excluding humans (M), and vertebrates excluding mammals (V, mostly viruses of fish and bird.....
Document: Next, we tested the similarity between virus, host amino acid, and codon preferences, as a measure for coherent adaptation of viruses with respect to their host taxonomical groups ( Figure 4B, right) . Interestingly, viruses that infect humans are not only adapted to the human host, but are also similar in codon preference to host groups comprising mammals excluding humans (M), and vertebrates excluding mammals (V, mostly viruses of fish and birds). On the other hand, the codon usage of viruses infecting vertebrates is highly dissimilar from that of all host groups shown (the opposite of that for human viruses, Supplementary information S1).
Search related documents:
Co phrase search for related documents- amino acid and codon usage: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- amino acid and host amino acid: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- amino acid and host group: 1, 2, 3
- amino acid and human host: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- amino acid and human host adapt: 1
- amino acid and human infect: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14
- amino acid and human infect virus: 1, 2, 3
- amino acid and human virus: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- codon preference and human host: 1
- codon preference and human virus: 1, 2, 3
- codon usage and host amino acid: 1, 2
- codon usage and host group: 1, 2
- codon usage and human host: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- codon usage and human infect: 1, 2, 3, 4, 5
- codon usage and human virus: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- host amino acid and human host: 1, 2, 3, 4, 5, 6
- host amino acid and human infect: 1
- host amino acid and human virus: 1, 2, 3, 4, 5, 6
- host group and human virus: 1, 2, 3
Co phrase search for related documents, hyperlinks ordered by date