Selected article for: "alignment software and phylogenetic analysis"
Author: ALFRED, Niyokwishimira; LIU, Huan; LI, Mu Lan; HONG, Shao Feng; TANG, Hai Bo; WEI, Zu Zhang; CHEN, Ying; LI, Fa Kai; ZHONG, Yi Zhi; HUANG, Wei Jian
Title: Molecular epidemiology and phylogenetic analysis of diverse bovine astroviruses associated with diarrhea in cattle and water buffalo calves in China
  • Document date: 2015_2_13
    • ID: 029hqc82_11
    Snippet: Phylogenetic and genome analysis: Phylogenetic trees were constructed based on the nucleotide sequences of both partial and full-length ORF2 sequences using the Bootstrap Test Phylogeny algorithm with the neighbor-joining method included in the MEGA 4.1 software package (http://www. megasoftware.net/). Sequences were compared with those of other mammalian astroviruses. Pair distances of nucleotide sequences between bovine and water buffalo astrov.....
    Document: Phylogenetic and genome analysis: Phylogenetic trees were constructed based on the nucleotide sequences of both partial and full-length ORF2 sequences using the Bootstrap Test Phylogeny algorithm with the neighbor-joining method included in the MEGA 4.1 software package (http://www. megasoftware.net/). Sequences were compared with those of other mammalian astroviruses. Pair distances of nucleotide sequences between bovine and water buffalo astroviruses, as well as the ORF1b/ORF2 junction, were analyzed using DNAstar software (Lasergene 7; MegAlign Program with the ClustalW sequence alignment algorithm).

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