Selected article for: "iq tree and maximum likelihood"
Author: Folarin, Onikepe A.; Ehichioya, Deborah; Schaffner, Stephen F.; Winnicki, Sarah M.; Wohl, Shirlee; Eromon, Philomena; West, Kendra L.; Gladden-Young, Adrianne; Oyejide, Nicholas E.; Matranga, Christian B.; Deme, Awa Bineta; James, Ayorinde; Tomkins-Tinch, Christopher; Onyewurunwa, Kenneth; Ladner, Jason T.; Palacios, Gustavo; Nosamiefan, Iguosadolo; Andersen, Kristian G.; Omilabu, Sunday; Park, Daniel J.; Yozwiak, Nathan L.; Nasidi, Abdusallam; Garry, Robert F.; Tomori, Oyewale; Sabeti, Pardis C.; Happi, Christian T.
Title: Ebola Virus Epidemiology and Evolution in Nigeria
  • Document date: 2016_10_15
    • ID: 2g9ggwog_24
    Snippet: The maximum likelihood tree was produced using IQ-TREE software (version 1.3.13) [17] , a TIM+I (a transitional model with a proportion of invariable sites) substitution model selected by ModelFinder (implemented in IQ-TREE), and 1000 bootstrap replicates. Liberian EBOV sequences included all genomes publicly available on GenBank as of 17 February 2016 (Supplementary Data 3). (Sequence assemblies are available from GenBank and reads available fro.....
    Document: The maximum likelihood tree was produced using IQ-TREE software (version 1.3.13) [17] , a TIM+I (a transitional model with a proportion of invariable sites) substitution model selected by ModelFinder (implemented in IQ-TREE), and 1000 bootstrap replicates. Liberian EBOV sequences included all genomes publicly available on GenBank as of 17 February 2016 (Supplementary Data 3). (Sequence assemblies are available from GenBank and reads available from the sequence read archive, accessible under BioProject PRJNA316870.)

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