Author: Pickett, Brett E.; Sadat, Eva L.; Zhang, Yun; Noronha, Jyothi M.; Squires, R. Burke; Hunt, Victoria; Liu, Mengya; Kumar, Sanjeev; Zaremba, Sam; Gu, Zhiping; Zhou, Liwei; Larson, Christopher N.; Dietrich, Jonathan; Klem, Edward B.; Scheuermann, Richard H.
Title: ViPR: an open bioinformatics database and analysis resource for virology research Document date: 2011_10_17
ID: 48ym7eti_24
Snippet: Multiple sequence alignment calculation and visualization. Sequence data from multiple sources, including search results, working sets and uploaded sequences in FASTA format, can be used as input to run a custom MUSCLE alignment on the ViPR server. After completion, ViPR assists users in viewing, exploring and modifying the label or sequence information within an alignment. Upon visual inspection with JalView, the alignment of nucleotide sequence.....
Document: Multiple sequence alignment calculation and visualization. Sequence data from multiple sources, including search results, working sets and uploaded sequences in FASTA format, can be used as input to run a custom MUSCLE alignment on the ViPR server. After completion, ViPR assists users in viewing, exploring and modifying the label or sequence information within an alignment. Upon visual inspection with JalView, the alignment of nucleotide sequences from the Dengue virus use case shows that these genomes are well conserved overall with the serotype-specific relations observed in the phylogenetic analysis recapitulated in the sequence alignments ( Figure 1B) .
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