Selected article for: "Illumina sequencing and nextgeneration sequencing"
Author: Ma, Yuanmei; Zhang, Yu; Liang, Xueya; Lou, Fangfei; Oglesbee, Michael; Krakowka, Steven; Li, Jianrong
Title: Origin, Evolution, and Virulence of Porcine Deltacoronaviruses in the United States
  • Document date: 2015_3_10
    • ID: 6o7j5k9n_34
    Snippet: Based upon the genomic sequence of strain HKU15-44 (15), eight sets of primers were designed to amplify the full-length genome of the PdCV Ohio CVM1 strain. RT-PCR was performed using a one-step RT-PCR kit (Qiagen). The PCR products were purified and sequenced at The Ohio State University Plant Microbe Genetics Facility. The total RNA of filtered intestinal contents was also submitted for Illumina TruSeq (Illumina, San Diego, CA) library preparat.....
    Document: Based upon the genomic sequence of strain HKU15-44 (15), eight sets of primers were designed to amplify the full-length genome of the PdCV Ohio CVM1 strain. RT-PCR was performed using a one-step RT-PCR kit (Qiagen). The PCR products were purified and sequenced at The Ohio State University Plant Microbe Genetics Facility. The total RNA of filtered intestinal contents was also submitted for Illumina TruSeq (Illumina, San Diego, CA) library preparation and nextgeneration sequencing (NGS) on Illumina MiSeq (Illumina) at the University of Minnesota Genomics Center, Minneapolis, MN. Using a template assembly (SeqMan NGen, DNASTAR version 11; Madison, WI), the PdCV sequences were assembled using the full-length genome of the U.S. PdCV MI strain.

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