Author: Ma, Yuanmei; Zhang, Yu; Liang, Xueya; Lou, Fangfei; Oglesbee, Michael; Krakowka, Steven; Li, Jianrong
Title: Origin, Evolution, and Virulence of Porcine Deltacoronaviruses in the United States Document date: 2015_3_10
ID: 6o7j5k9n_43
Snippet: Genome analysis. The nucleotide sequences of the genomes and the amino acid sequences of the open reading frames (ORFs) were compared to those of other CoVs using DNASTAR software (DNASTAR, Inc., Madison, WI). Phylogenetic tree construction was performed using the neighbor-joining method with the MEGA 6 program. Protein family analysis was performed using Pfam and InterProScan. Virus strains used for sequence and phylogenetic analysis and accessi.....
Document: Genome analysis. The nucleotide sequences of the genomes and the amino acid sequences of the open reading frames (ORFs) were compared to those of other CoVs using DNASTAR software (DNASTAR, Inc., Madison, WI). Phylogenetic tree construction was performed using the neighbor-joining method with the MEGA 6 program. Protein family analysis was performed using Pfam and InterProScan. Virus strains used for sequence and phylogenetic analysis and accession numbers are listed in Table S1 in the supplemental material.
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