Author: Schlub, Timothy E; Buchmann, Jan P; Holmes, Edward C
Title: A Simple Method to Detect Candidate Overlapping Genes in Viruses Using Single Genome Sequences Document date: 2018_8_7
ID: yiqdsf9z_23
Snippet: The three smallest ORFs detected were in Ligustrum necrotic ringspot virus, a positive-sense virus from the Betaflexiviridae, Okahandja mammarenavirus, a negative-sense virus from the Arenaviridae, and Simbu orthobunyavirus, a vector-borne negative-sense virus from the Peribunyaviridae. These ORFs had lengths 105, 91, and 87 codons, and were in frames þ1, þ2, and Àc2, respectively. Interestingly, these were three of the four detected ORFs that.....
Document: The three smallest ORFs detected were in Ligustrum necrotic ringspot virus, a positive-sense virus from the Betaflexiviridae, Okahandja mammarenavirus, a negative-sense virus from the Arenaviridae, and Simbu orthobunyavirus, a vector-borne negative-sense virus from the Peribunyaviridae. These ORFs had lengths 105, 91, and 87 codons, and were in frames þ1, þ2, and Àc2, respectively. Interestingly, these were three of the four detected ORFs that completely encompass their relatively short reference genes, suggesting that the reference gene may be entirely located within the ORFs discovered by this method.
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