Selected article for: "accession number and Genbank accession number"
Author: Park, Donghyun; Huh, Hee Jae; Kim, Yeon Jeong; Son, Dae-Soon; Jeon, Hyo-Jeong; Im, Eu-Hyun; Kim, Jong-Won; Lee, Nam Yong; Kang, Eun-Suk; Kang, Cheol In; Chung, Doo Ryeon; Ahn, Jin-Hyun; Peck, Kyong Ran; Choi, Sun Shim; Kim, Yae-Jean; Ki, Chang-Seok; Park, Woong-Yang
Title: Analysis of intrapatient heterogeneity uncovers the microevolution of Middle East respiratory syndrome coronavirus
  • Document date: 2016_11_23
    • ID: xgp2vx6o_35
    Snippet: We downloaded a total of 105 human MERS-CoV genome sequences from the NCBI database (http://www.ncbi.nlm.nih.gov/genomes/VirusVariation/Database/nph-select.cgi? cmd=database&taxid=1335626). Combining the eight MERS-CoV genome sequences from our study with the downloaded sequences, a phylogenetic analysis was performed after aligning the sequences using MUSCLE (http://drive5.com/muscle). A total of 30,130 aligned nucleotides were input into MEGA 7.....
    Document: We downloaded a total of 105 human MERS-CoV genome sequences from the NCBI database (http://www.ncbi.nlm.nih.gov/genomes/VirusVariation/Database/nph-select.cgi? cmd=database&taxid=1335626). Combining the eight MERS-CoV genome sequences from our study with the downloaded sequences, a phylogenetic analysis was performed after aligning the sequences using MUSCLE (http://drive5.com/muscle). A total of 30,130 aligned nucleotides were input into MEGA 7.0 (http://www.megasoftware.net) (Tamura et al. 2013) , and a phylogenetic tree was constructed using the neighbor-joining method. The GenBank accession number followed by a brief description of the sequence, including the virus variant name and the country of isolation, is provided for each sequence in Supplemental Figure S2 . Evolutionary distances were computed using the Kimura two-parameter model. The scale bar at the bottom of the figure indicates nucleotide substitutions per site.

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