Author: Stenglein, Mark D.; Jacobson, Elliott R.; Wozniak, Edward J.; Wellehan, James F. X.; Kincaid, Anne; Gordon, Marcus; Porter, Brian F.; Baumgartner, Wes; Stahl, Scott; Kelley, Karen; Towner, Jonathan S.; DeRisi, Joseph L.
Title: Ball Python Nidovirus: a Candidate Etiologic Agent for Severe Respiratory Disease in Python regius Document date: 2014_9_9
ID: rb3qdunj_56
Snippet: LG was identified as the best-fit model (82, 83) . Bayesian analyses of each alignment were performed using the software program MrBayes 3.2.2 (84) on the CIPRES server (85), with gamma-distributed rate variation and a proportion of invariant sites, and amino acid models were also assessed by model jumping. The first 10% of 1,000,000 iterations were discarded as a burn-in, based on examination of trends of the log probability versus generation. T.....
Document: LG was identified as the best-fit model (82, 83) . Bayesian analyses of each alignment were performed using the software program MrBayes 3.2.2 (84) on the CIPRES server (85), with gamma-distributed rate variation and a proportion of invariant sites, and amino acid models were also assessed by model jumping. The first 10% of 1,000,000 iterations were discarded as a burn-in, based on examination of trends of the log probability versus generation. Two independent Bayesian analyses were run to avoid entrapment on local optima.
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