Selected article for: "Neighbor Joining method and phylogenetic tree"
Author: Chen, Haifeng; Mammel, Mark; Kulka, Mike; Patel, Isha; Jackson, Scott; Goswami, Biswendu B.
Title: Detection and Identification of Common Food-Borne Viruses with a Tiling Microarray
  • Document date: 2011_5_16
    • ID: ycs5rtoc_16
    Snippet: The hybridization result from HAS 15 and PA 21, respectively, when the analysis was extended over 3.7 kb from the 5' end. Clearly HAV strains hybridized to probes from HAV strains only. Strong hybridization to the oligonucleotide probes derived from their respective subgenotype genomes represented on the array indicates the presence of these viruses. (C) Phylogenetic analysis of NoV#186 based on 300-bp sequenced PCR amplicon and other sequences f.....
    Document: The hybridization result from HAS 15 and PA 21, respectively, when the analysis was extended over 3.7 kb from the 5' end. Clearly HAV strains hybridized to probes from HAV strains only. Strong hybridization to the oligonucleotide probes derived from their respective subgenotype genomes represented on the array indicates the presence of these viruses. (C) Phylogenetic analysis of NoV#186 based on 300-bp sequenced PCR amplicon and other sequences from representative NoV strains from GenBank. Phylogenetic tree was plotted by Neighbor-joining method.

    Search related documents:
    Co phrase search for related documents
    • HAV strain and virus presence: 1
    • NoV strain and strong hybridization: 1
    • oligonucleotide probe and sequence PCR amplicon: 1
    • oligonucleotide probe and strong hybridization: 1
    • oligonucleotide probe and virus presence: 1
    • PCR amplicon and sequence PCR amplicon: 1, 2, 3, 4, 5, 6
    • PCR amplicon and sequence sequence PCR amplicon: 1
    • PCR amplicon and sequence sequence PCR amplicon base: 1
    • phylogenetic analysis and sequence PCR amplicon: 1
    • phylogenetic analysis and strong hybridization: 1
    • phylogenetic analysis and subgenotype genome: 1
    • phylogenetic analysis and virus presence: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
    • phylogenetic tree and strong hybridization: 1, 2
    • phylogenetic tree and virus presence: 1, 2