Author: Sperschneider, Jana; Datta, Amitava
Title: DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model Document date: 2010_1_31
ID: q26f8pv4_38
Snippet: For complex pseudoknot foldings such as the hepatitis delta virus (HDV) double pseudoknot configuration, DotKnot gives the best prediction results out of all tested algorithms. The CrPV IRES has a long pseudoknot, which contains another nested pseudoknot. For this pseudoknot, DotKnot also gives the best prediction in terms of sensitivity and PPV......
Document: For complex pseudoknot foldings such as the hepatitis delta virus (HDV) double pseudoknot configuration, DotKnot gives the best prediction results out of all tested algorithms. The CrPV IRES has a long pseudoknot, which contains another nested pseudoknot. For this pseudoknot, DotKnot also gives the best prediction in terms of sensitivity and PPV.
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