Author: Sperschneider, Jana; Datta, Amitava
Title: DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model Document date: 2010_1_31
ID: q26f8pv4_22
Snippet: So far, DotKnot derived a set of regular stems, interrupted stems and multiloops in a heuristic fashion from the probability dot plot (Figure 2 ). There is no guarantee to find the structure element with local minimum free energy for a given sequence stretch. However, dictionaries D L s and D M s will contain structures with free energy value close or equal to the local minimum free energy. These elements will be of great benefit for the eliminat.....
Document: So far, DotKnot derived a set of regular stems, interrupted stems and multiloops in a heuristic fashion from the probability dot plot (Figure 2 ). There is no guarantee to find the structure element with local minimum free energy for a given sequence stretch. However, dictionaries D L s and D M s will contain structures with free energy value close or equal to the local minimum free energy. These elements will be of great benefit for the elimination of false positive pseudoknots.
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