Author: Sperschneider, Jana; Datta, Amitava
Title: DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model Document date: 2010_1_31
ID: q26f8pv4_28
Snippet: After the first level of pseudoknot construction, free energy values are evaluated for each core H-type pseudoknot, which allows to filter unlikely pseudoknots. Only pseudoknots with low free energy (and therefore likely to form) will remain for the next step, which involves recursive secondary structure formation in the three pseudoknot loops. For all core H-type pseudoknots p 1 , . . . , p n , free energy ÃG is calculated as.....
Document: After the first level of pseudoknot construction, free energy values are evaluated for each core H-type pseudoknot, which allows to filter unlikely pseudoknots. Only pseudoknots with low free energy (and therefore likely to form) will remain for the next step, which involves recursive secondary structure formation in the three pseudoknot loops. For all core H-type pseudoknots p 1 , . . . , p n , free energy ÃG is calculated as
Search related documents:
Co phrase search for related documents- free energy and pseudoknot construction: 1
- free energy and pseudoknot loop: 1, 2, 3, 4
- free energy and recursive secondary structure formation: 1
- free energy and secondary structure: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- free energy and secondary structure formation: 1, 2, 3, 4
- low free energy and pseudoknot loop: 1
- low free energy and secondary structure: 1
- pseudoknot construction and secondary structure: 1, 2
- pseudoknot loop and secondary structure: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15
- pseudoknot loop and secondary structure formation: 1
- recursive secondary structure formation and secondary structure: 1
- recursive secondary structure formation and secondary structure formation: 1
Co phrase search for related documents, hyperlinks ordered by date