Selected article for: "enrichment analysis result and functional analysis"
Author: Aurrecoechea, Cristina; Barreto, Ana; Basenko, Evelina Y.; Brestelli, John; Brunk, Brian P.; Cade, Shon; Crouch, Kathryn; Doherty, Ryan; Falke, Dave; Fischer, Steve; Gajria, Bindu; Harb, Omar S.; Heiges, Mark; Hertz-Fowler, Christiane; Hu, Sufen; Iodice, John; Kissinger, Jessica C.; Lawrence, Cris; Li, Wei; Pinney, Deborah F.; Pulman, Jane A.; Roos, David S.; Shanmugasundram, Achchuthan; Silva-Franco, Fatima; Steinbiss, Sascha; Stoeckert, Christian J.; Spruill, Drew; Wang, Haiming; Warrenfeltz, Susanne; Zheng, Jie
Title: EuPathDB: the eukaryotic pathogen genomics database resource
  • Document date: 2017_1_4
    • ID: t94aufs3_17
    Snippet: Metabolic pathways. Pathways are integrated from Meta-Cyc, KEGG, TrypanoCyc and LeishCyc (18) (19) (20) (21) (22) as networks of enzymatic reactions and substrate/product compounds. Genes are mapped to Pathways based on EC numbers. Pathway record pages feature a Cytoscape image which can be 'painted' with experimental data, e.g. gene expression values or ortholog profiles. For easy transition to functional analysis, gene search results can be con.....
    Document: Metabolic pathways. Pathways are integrated from Meta-Cyc, KEGG, TrypanoCyc and LeishCyc (18) (19) (20) (21) (22) as networks of enzymatic reactions and substrate/product compounds. Genes are mapped to Pathways based on EC numbers. Pathway record pages feature a Cytoscape image which can be 'painted' with experimental data, e.g. gene expression values or ortholog profiles. For easy transition to functional analysis, gene search results can be converted to pathways using the Transform to Pathways function in the Add Step popup or users can run a pathways enrichment analysis of their gene result to identify pathways that are statistically enriched.

    Search related documents:
    Co phrase search for related documents
    • EC number and metabolic pathway: 1
    • enzymatic reaction and gene expression: 1
    • functional analysis and gene expression: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
    • functional analysis and gene pathway enrichment analysis: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
    • functional analysis and gene search: 1, 2
    • functional analysis and metabolic pathway: 1, 2
    • gene expression and metabolic pathway: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12