Selected article for: "automatically consensus genome assemble and Detective Coronavirus Typing tool"
Author: Cleemput, Sara; Dumon, Wim; Fonseca, Vagner; Karim, Wasim Abdool; Giovanetti, Marta; Alcantara, Luiz Carlos; Deforche, Koen; de Oliveira, Tulio
Title: Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes
  • Document date: 2020_2_28
    • ID: st5idleq_6
    Snippet: We developed and released the Genome Detective Coronavirus Typing tool as a free-of-charge resource in the third week of January 2020 in order to help the rapid characterization of COVID-19 infections. This tool allows the analysis of whole or partial viral genomes within minutes. It accepts assembled genomes in FASTA format or raw NGS data in FASTQ format from Illumina, Ion Torrent, PACBIO or Oxford Nanopore Technologies (ONT) can be submitted t.....
    Document: We developed and released the Genome Detective Coronavirus Typing tool as a free-of-charge resource in the third week of January 2020 in order to help the rapid characterization of COVID-19 infections. This tool allows the analysis of whole or partial viral genomes within minutes. It accepts assembled genomes in FASTA format or raw NGS data in FASTQ format from Illumina, Ion Torrent, PACBIO or Oxford Nanopore Technologies (ONT) can be submitted to the Genome Detective Virus Tool (Vilsker et al., 2019) to automatically assemble the consensus genome prior to executing the Coronavirus Typing Tool. User effort is minimal, and a user can submit multiple FASTA sequences at once.

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