EuPathDB: the eukaryotic pathogen genomics database resource

Aurrecoechea, Cristina; Barreto, Ana; Basenko, Evelina Y.; Brestelli, John; Brunk, Brian P.; Cade, Shon; Crouch, Kathryn; Doherty, Ryan; Falke, Dave; Fischer, Steve; Gajria, Bindu; Harb, Omar S.; Heiges, Mark; Hertz-Fowler, Christiane; Hu, Sufen; Iodice, John; Kissinger, Jessica C.; Lawrence, Cris; Li, Wei; Pinney, Deborah F.; Pulman, Jane A.; Roos, David S.; Shanmugasundram, Achchuthan; Silva-Franco, Fatima; Steinbiss, Sascha; Stoeckert, Christian J.; Spruill, Drew; Wang, Haiming; Warrenfeltz, Susanne; Zheng, Jie

Data tables (4E, 4F and within Figure 4D ) are collapsible, interactive, contain sortable columns and present transcript-specific information when data can be unambiguously assigned to a transcript. Tables with two or more rows include a search function. The Transcriptomics (Figure 4E) , Protein Properties and Features ( Figure 4F ), Mass Spec -based Expression Evidence and Sequences tables contain expandable rows for retrieving detailed information. Each row of the Transcriptomics table represents a data set and expanding a row reveals graphs, data tables, and a data set description, as well as coverage plots for RNA sequencing data. Expansion of the rows in the Protein Properties and Features table reveals the domains, BLASTP hits and other analysis results pertinent to the transcript's protein product. The Mass Spec-based Expression Evidence Graphic table shows proteomic evidence associated with each transcript. The Sequences table offers genomic, coding, predicted mRNA and predicted protein sequences for each transcript.