Author: Andrew Rambaut; Edward C Holmes; Verity Hill; Aine OToole; John McCrone; Chris Ruis; Louis du Plessis; Oliver Pybus
Title: A dynamic nomenclature proposal for SARS-CoV-2 to assist genomic epidemiology Document date: 2020_4_19
ID: l7ymcyw7_7
Snippet: . CC-BY-NC-ND 4.0 International license author/funder. It is made available under a The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/2020.04.17.046086 doi: bioRxiv preprint A special challenge in the case of COVID-19 is that genome sequence data is being generated rapidly and at high volumes, such that by the end of the pandemic we can expect tens of thousands of SARS-CoV-2 genomes to have been.....
Document: . CC-BY-NC-ND 4.0 International license author/funder. It is made available under a The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/2020.04.17.046086 doi: bioRxiv preprint A special challenge in the case of COVID-19 is that genome sequence data is being generated rapidly and at high volumes, such that by the end of the pandemic we can expect tens of thousands of SARS-CoV-2 genomes to have been sequenced. Any lineage naming system must therefore be capable of handling tens to hundreds of thousands of virus genomes sampled longitudinally and densely through time. Further, to be practical, any lineage naming system should have no more than one or two hundred active lineage labels, as any more would obfuscate rather than clarify discussion and will be difficult to conceptualise.
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