Author: Aurrecoechea, Cristina; Barreto, Ana; Basenko, Evelina Y.; Brestelli, John; Brunk, Brian P.; Cade, Shon; Crouch, Kathryn; Doherty, Ryan; Falke, Dave; Fischer, Steve; Gajria, Bindu; Harb, Omar S.; Heiges, Mark; Hertz-Fowler, Christiane; Hu, Sufen; Iodice, John; Kissinger, Jessica C.; Lawrence, Cris; Li, Wei; Pinney, Deborah F.; Pulman, Jane A.; Roos, David S.; Shanmugasundram, Achchuthan; Silva-Franco, Fatima; Steinbiss, Sascha; Stoeckert, Christian J.; Spruill, Drew; Wang, Haiming; Warrenfeltz, Susanne; Zheng, Jie
Title: EuPathDB: the eukaryotic pathogen genomics database resource Document date: 2017_1_4
ID: t94aufs3_32
Snippet: Filtering samples based on metadata. Sequences from pathogen isolates and data from host clinical blood samples are often accompanied by rich metadata-sample characteristics including host, age, geographic location, disease status and parasitemia. EuPathDB's new filter parameter ( Figure 5 ) increases the user's power to mine data via display of sample characteristics (metadata) on the interface for selection of samples while configuring a searc.....
Document: Filtering samples based on metadata. Sequences from pathogen isolates and data from host clinical blood samples are often accompanied by rich metadata-sample characteristics including host, age, geographic location, disease status and parasitemia. EuPathDB's new filter parameter ( Figure 5 ) increases the user's power to mine data via display of sample characteristics (metadata) on the interface for selection of samples while configuring a search or multiple sequence alignment. For example, the filter parameter makes it possible to compare the antigenicity of parasite genes between infected children and uninfected children within the same dataset. The filter parameter is available for searches and sequence alignments that access SNP, ChIP-seq and hostresponse data.
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