Author: Anthony, Simon J.; Johnson, Christine K.; Greig, Denise J.; Kramer, Sarah; Che, Xiaoyu; Wells, Heather; Hicks, Allison L.; Joly, Damien O.; Wolfe, Nathan D.; Daszak, Peter; Karesh, William; Lipkin, W. I.; Morse, Stephen S.; Mazet, Jonna A. K.; Goldstein, Tracey
Title: Global patterns in coronavirus diversity Document date: 2017_6_12
ID: tboc6zyd_15
Snippet: A presence/absence matrix was constructed to show the distribution of viral sequence clusters across all species. Using the Python package NetworkX (Hagberg et al. 2008 ), a network model was constructed, connecting bat species to all viral clusters that were identified within that species in our data. The network is made up of thirty-one connected components, eighty-two viral clusters, eighty-five bat species, and 159 edges. Networks were plotte.....
Document: A presence/absence matrix was constructed to show the distribution of viral sequence clusters across all species. Using the Python package NetworkX (Hagberg et al. 2008 ), a network model was constructed, connecting bat species to all viral clusters that were identified within that species in our data. The network is made up of thirty-one connected components, eighty-two viral clusters, eighty-five bat species, and 159 edges. Networks were plotted using Gephi using the force-directed algorithm ForceAtlas2 (Jacomy et al. 2014 ). Specifically, we plotted two bipartite graphs, one where hosts are colored by region and one in which they are colored by family.
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