Selected article for: "ring domain and Zinc finger"
Author: Stenglein, Mark D.; Sanders, Chris; Kistler, Amy L.; Ruby, J. Graham; Franco, Jessica Y.; Reavill, Drury R.; Dunker, Freeland; DeRisi, Joseph L.
Title: Identification, Characterization, and In Vitro Culture of Highly Divergent Arenaviruses from Boa Constrictors and Annulated Tree Boas: Candidate Etiological Agents for Snake Inclusion Body Disease
  • Document date: 2012_8_14
    • ID: vkhg20he_16
    Snippet: The predicted small "Z" proteins of CASV and GGV (115 and 116 amino acids, respectively) were most similar to nonviral RING domain-containing proteins, with the best BLASTP (NCBI nr database) hit for both being that to various zinc finger and RING domain-containing proteins. These alignments were driven largely by conserved cysteine residues and had poor expect (E) values of greater than 0.1. Using the more sensitive HHPred software (29) , which .....
    Document: The predicted small "Z" proteins of CASV and GGV (115 and 116 amino acids, respectively) were most similar to nonviral RING domain-containing proteins, with the best BLASTP (NCBI nr database) hit for both being that to various zinc finger and RING domain-containing proteins. These alignments were driven largely by conserved cysteine residues and had poor expect (E) values of greater than 0.1. Using the more sensitive HHPred software (29) , which detects remote homologies and makes structural predictions of proteins of unknown structure, the best hits were also to RING domain-containing ubiquitin ligases, with probabilities of homologous relationship of Ͼ92%.

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