Author: Stenglein, Mark D.; Sanders, Chris; Kistler, Amy L.; Ruby, J. Graham; Franco, Jessica Y.; Reavill, Drury R.; Dunker, Freeland; DeRisi, Joseph L.
Title: Identification, Characterization, and In Vitro Culture of Highly Divergent Arenaviruses from Boa Constrictors and Annulated Tree Boas: Candidate Etiological Agents for Snake Inclusion Body Disease Document date: 2012_8_14
ID: vkhg20he_34_1
Snippet: es to the NCBI nonredundant nucleotide (nt) and protein (nr) databases. Only sequences whose best hit and whose pair's best hit were to viral sequences were further considered. The PRICE de novo targeted genome assembler was used to generate initial contiguous virus sequences (G. Ruby; freely available at: http://derisilab.ucsf.edu /software/price/index.html). For coverage information, reads were aligned to Sanger validated assemblies using the B.....
Document: es to the NCBI nonredundant nucleotide (nt) and protein (nr) databases. Only sequences whose best hit and whose pair's best hit were to viral sequences were further considered. The PRICE de novo targeted genome assembler was used to generate initial contiguous virus sequences (G. Ruby; freely available at: http://derisilab.ucsf.edu /software/price/index.html). For coverage information, reads were aligned to Sanger validated assemblies using the Bowtie2 alignment software, version 2.0.0 (62) .
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