Author: Kshirsagar, Meghana; Carbonell, Jaime; Klein-Seetharaman, Judith
Title: Multitask learning for host–pathogen protein interactions Document date: 2013_7_1
ID: sdgt2ms5_47
Snippet: For Salmonella typhi, we used the list of 62 interacting protein pairs reported in Schleker et al. (2012) , which were obtained by the authors by manual literature curation. These interactions come from small-scale experiments. The other three PPI interaction datasets were obtained from the PHISTO database. Most of the reported interactions for these three bacterial species come from a single high-throughput experimental study reported in Dyer et.....
Document: For Salmonella typhi, we used the list of 62 interacting protein pairs reported in Schleker et al. (2012) , which were obtained by the authors by manual literature curation. These interactions come from small-scale experiments. The other three PPI interaction datasets were obtained from the PHISTO database. Most of the reported interactions for these three bacterial species come from a single high-throughput experimental study reported in Dyer et al. (2010) . While F.tularensis, S.typhi and Y.pestis are gram-negative gamma-protobacteria, B.anthracis is a gram-positive bacteria. The number of unique proteins in each bacterial species, the sizes of all datasets and the number of all possible host-pathogen protein pairs are listed in Table 1 .
Search related documents:
Co phrase search for related documents- experimental study and gram positive bacteria: 1, 2, 3
- experimental study and high throughput: 1, 2, 3, 4, 5
- experimental study and host pathogen: 1, 2, 3, 4, 5
- experimental study and interact protein: 1, 2, 3, 4
- gram positive bacteria and high throughput: 1, 2
- gram positive bacteria and host pathogen: 1, 2, 3
- gram positive bacteria and host pathogen protein: 1
- gram positive bacteria and interact protein: 1
- high throughput and host pathogen: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- high throughput and host pathogen protein: 1, 2, 3, 4, 5
- high throughput and interact protein: 1, 2
- high throughput and interact protein pair: 1
- high throughput and interaction dataset: 1, 2
- high throughput and literature curation: 1, 2
- high throughput and manual literature curation: 1
- host pathogen and interact protein: 1, 2
- host pathogen and interaction dataset: 1, 2
- host pathogen and literature curation: 1, 2
- host pathogen and manual literature curation: 1
Co phrase search for related documents, hyperlinks ordered by date