Author: Luis, Angela D.; O'Shea, Thomas J.; Hayman, David T. S.; Wood, James L. N.; Cunningham, Andrew A.; Gilbert, Amy T.; Mills, James N.; Webb, Colleen T.
Title: Network analysis of host–virus communities in bats and rodents reveals determinants of cross-species transmission Document date: 2015_8_24
ID: yqc8r3ll_37
Snippet: In these analyses, phylogeny is not a covariate, but incorporated into the error structure, and an additional phylogenetic correlation parameter (k; Pagel 1999) is estimated, to determine if phylogeny can explain variation unexplained by the model covariates. For bats, k, was 0 for the best models for number of viruses and degree (Table S3 and S6), indicating that phylogeny did not explain any additional variation. A likely explanation is that th.....
Document: In these analyses, phylogeny is not a covariate, but incorporated into the error structure, and an additional phylogenetic correlation parameter (k; Pagel 1999) is estimated, to determine if phylogeny can explain variation unexplained by the model covariates. For bats, k, was 0 for the best models for number of viruses and degree (Table S3 and S6), indicating that phylogeny did not explain any additional variation. A likely explanation is that the best models included diet, which is strongly related to phylogeny. However, k for the best model for betweenness was 0.79 (Table S9 ), indicating that phylogeny explained additional variation.
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