Author: Reeder, Jens; Steffen, Peter; Giegerich, Robert
Title: pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows Document date: 2007_5_3
ID: zgv4kd6j_4
Snippet: The program pknotsRG enriches the usual RNA folding routines by the class of simple recursive pseudoknots. It uses the current thermodynamic energy model by the Turner group (5) (iii) Local folding: The pseudoknot with the best energy to length ratio is predicted. This mode helps to identify promising pseudoknot candidates in otherwise misfolded structures......
Document: The program pknotsRG enriches the usual RNA folding routines by the class of simple recursive pseudoknots. It uses the current thermodynamic energy model by the Turner group (5) (iii) Local folding: The pseudoknot with the best energy to length ratio is predicted. This mode helps to identify promising pseudoknot candidates in otherwise misfolded structures.
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