Author: Chan, Joseph M.; Rabadan, Raul
Title: Quantifying Pathogen Surveillance Using Temporal Genomic Data Document date: 2013_1_29
ID: u2t1x89m_19
Snippet: Dengue and West Nile virus surveillance. As a proof of concept, we have also shown that the q2 coefficient can be used to monitor surveillance efforts for other RNA viruses, such as dengue virus and West Nile virus. Here, we focus on the env gene of these viruses, as it encodes the longest of the structural proteins, which is prevalently sequenced for subtyping and has the bestdocumented evolutionary rates of all flavivirus proteins (25, 26, 30, .....
Document: Dengue and West Nile virus surveillance. As a proof of concept, we have also shown that the q2 coefficient can be used to monitor surveillance efforts for other RNA viruses, such as dengue virus and West Nile virus. Here, we focus on the env gene of these viruses, as it encodes the longest of the structural proteins, which is prevalently sequenced for subtyping and has the bestdocumented evolutionary rates of all flavivirus proteins (25, 26, 30, 31) .
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