Author: Amanda D. Melin; Mareike C. Janiak; Frank Marrone; Paramjit S. Arora; James P. Higham
Title: Comparative ACE2 variation and primate COVID-19 risk Document date: 2020_4_11
ID: bieqw3x1_8
Snippet: To visualize patterns of gene conservation across taxa and identify the congruence of the ACE2 gene tree with currently accepted phylogenetic relationships among species, we reconstructed trees using both Bayesian (MrBayes 3.2.6 24 ) and Maximum Likelihood (RAxML 8.2.11 25 ) methods with 200,000 MCMC cycles and 1,000 bootstrap replicates, respectively (code available on GitHub 26 ). Gene trees were compared to a current species phylogeny assemble.....
Document: To visualize patterns of gene conservation across taxa and identify the congruence of the ACE2 gene tree with currently accepted phylogenetic relationships among species, we reconstructed trees using both Bayesian (MrBayes 3.2.6 24 ) and Maximum Likelihood (RAxML 8.2.11 25 ) methods with 200,000 MCMC cycles and 1,000 bootstrap replicates, respectively (code available on GitHub 26 ). Gene trees were compared to a current species phylogeny assembled using TimeTree 27 .
Search related documents:
Co phrase search for related documents- gene conservation and phylogenetic relationship: 1
- gene tree and phylogenetic relationship: 1, 2
- gene tree and tree reconstruct: 1
Co phrase search for related documents, hyperlinks ordered by date