Author: Roshan Kumar; Helianthous Verma; Nirjara Singhvi; Utkarsh Sood; Vipin Gupta; Mona Singh; Rashmi Sharma; Princy Hira; Shekhar Nagar; Chandni Talwar; Namita Nayyar; Shailly Anand; Charu Dogra Rawat; Mansi Verma; Ram Kishan Negi; Yogendra Singh; Rup Lal
Title: Comparative Genomic Analysis of Rapidly Evolving SARS CoV-2 Viruses Reveal Mosaic Pattern of Phylogeographical Distribution Document date: 2020_3_30
ID: eqwxkwqa_9
Snippet: Harvest suite [33] . As only genomes within a specified MUMI distance threshold are recruited, 148 we used option -c to force include all the strains. For output, it produced a core-genome 149 alignment, variant calls and a phylogeny based on Single nucleotide polymorphisms. The SNPs 150 were further visualized in Gingr, a dynamic visual platform [33] . Further, the tree was 151 visualized in interactive Tree of Life (iTOL) [31] . 152.....
Document: Harvest suite [33] . As only genomes within a specified MUMI distance threshold are recruited, 148 we used option -c to force include all the strains. For output, it produced a core-genome 149 alignment, variant calls and a phylogeny based on Single nucleotide polymorphisms. The SNPs 150 were further visualized in Gingr, a dynamic visual platform [33] . Further, the tree was 151 visualized in interactive Tree of Life (iTOL) [31] . 152
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