Author: Wang, Shiliang; Sundaram, Jaideep P.; Stockwell, Timothy B.
Title: VIGOR extended to annotate genomes for additional 12 different viruses Document date: 2012_6_4
ID: wd3ir3wg_29
Snippet: A total of 101 complete genomes of measles and mump viruses were downloaded from NCBI. VIGOR predicted 774 genes, whereas GenBank record indicates 759 genes in these genomes. VIGOR detected 15 new genes validated by comparing them with other viral proteins (data not shown here). Most of them are the C protein gene, which overlaps with P protein gene but in a different reading frame. Five VIGOR predictions have different start codons with the same.....
Document: A total of 101 complete genomes of measles and mump viruses were downloaded from NCBI. VIGOR predicted 774 genes, whereas GenBank record indicates 759 genes in these genomes. VIGOR detected 15 new genes validated by comparing them with other viral proteins (data not shown here). Most of them are the C protein gene, which overlaps with P protein gene but in a different reading frame. Five VIGOR predictions have different start codons with the same reading frame as GenBank annotations. All these five predictions are the fusion protein gene. Like the M2-1 protein of MPV, two versions of fusion protein exist in the GenBank protein database. VIGOR selected the longer one as the reference sequence to define the start codon. In GenBank annotations, the downstream ATG was selected as the start codon.
Search related documents:
Co phrase search for related documents- protein database and reference sequence: 1, 2, 3, 4, 5, 6, 7
- protein gene and reading frame: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73
- protein gene and reference sequence: 1, 2, 3, 4, 5
- protein gene and start codon: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
- protein gene and vigor prediction: 1, 2, 3
- protein gene and viral protein: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75
- reading frame and reference sequence: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
- reading frame and start codon: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30
- reading frame and vigor prediction: 1, 2, 3
- reading frame and viral protein: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70
- reference sequence and start codon: 1, 2, 3, 4, 5, 6, 7
- reference sequence and start codon define: 1
- reference sequence and vigor prediction: 1, 2, 3
- reference sequence and viral protein: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
- reference sequence start codon define and start codon: 1
- reference sequence start codon define and start codon define: 1
- start codon and vigor prediction: 1, 2
- start codon and viral protein: 1, 2, 3, 4, 5, 6
- vigor prediction and viral protein: 1, 2, 3, 4
Co phrase search for related documents, hyperlinks ordered by date