Selected article for: "acid region and amino acid region"
Author: Stenglein, Mark D.; Jacobson, Elliott R.; Wozniak, Edward J.; Wellehan, James F. X.; Kincaid, Anne; Gordon, Marcus; Porter, Brian F.; Baumgartner, Wes; Stahl, Scott; Kelley, Karen; Towner, Jonathan S.; DeRisi, Joseph L.
Title: Ball Python Nidovirus: a Candidate Etiologic Agent for Severe Respiratory Disease in Python regius
  • Document date: 2014_9_9
    • ID: rb3qdunj_55
    Snippet: Sequences from a set of 33 representative nidoviruses based on a previously published analysis were downloaded (see Table S3 in the supplemental material [42] ). Conserved protease, RdRp, and helicase domains in replicase polyproteins were identified using HMMER3 and BLAST alignments. Multiple sequence alignments of these domains were created using MAFFT version 7 with default parameters (see Fig. S5 ) (80) . Amino acid substitution models were e.....
    Document: Sequences from a set of 33 representative nidoviruses based on a previously published analysis were downloaded (see Table S3 in the supplemental material [42] ). Conserved protease, RdRp, and helicase domains in replicase polyproteins were identified using HMMER3 and BLAST alignments. Multiple sequence alignments of these domains were created using MAFFT version 7 with default parameters (see Fig. S5 ) (80) . Amino acid substitution models were evaluated for each region using corrected Aikake information criteria in the software program ProtTest 3.2.2 (81) .

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