Author: Malboeuf, Christine M.; Yang, Xiao; Charlebois, Patrick; Qu, James; Berlin, Aaron M.; Casali, Monica; Pesko, Kendra N.; Boutwell, Christian L.; DeVincenzo, John P.; Ebel, Gregory D.; Allen, Todd M.; Zody, Michael C.; Henn, Matthew R.; Levin, Joshua Z.
Title: Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification Document date: 2012_9_8
ID: s76c5ebd_24
Snippet: The comparison of the assemblies was performed by a custom script that first aligned them using MUSCLE (version 3.8) (38) and calculated their percent identity over the target region. The script then calculated the composition identity (i.e. the positions where the consensus bases either matched or were found as a non-dominant variant in the other sample) by comparing the nucleotide frequency tables using the alignment to match positions......
Document: The comparison of the assemblies was performed by a custom script that first aligned them using MUSCLE (version 3.8) (38) and calculated their percent identity over the target region. The script then calculated the composition identity (i.e. the positions where the consensus bases either matched or were found as a non-dominant variant in the other sample) by comparing the nucleotide frequency tables using the alignment to match positions.
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