Author: Sperschneider, Jana; Datta, Amitava
Title: DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model Document date: 2010_1_31
ID: q26f8pv4_13
Snippet: The detailed workflow for DotKnot is shown in Figure 2 . Given an RNA sequence, DotKnot finds sequence fragments with pseudoknot folding potential. These candidates are analysed in terms of their free energy values and credibility in the folded sequence. The output is a (possibly empty) set of detected pseudoknots, which can then be examined closely......
Document: The detailed workflow for DotKnot is shown in Figure 2 . Given an RNA sequence, DotKnot finds sequence fragments with pseudoknot folding potential. These candidates are analysed in terms of their free energy values and credibility in the folded sequence. The output is a (possibly empty) set of detected pseudoknots, which can then be examined closely.
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