EuPathDB: the eukaryotic pathogen genomics database resource

Aurrecoechea, Cristina; Barreto, Ana; Basenko, Evelina Y.; Brestelli, John; Brunk, Brian P.; Cade, Shon; Crouch, Kathryn; Doherty, Ryan; Falke, Dave; Fischer, Steve; Gajria, Bindu; Harb, Omar S.; Heiges, Mark; Hertz-Fowler, Christiane; Hu, Sufen; Iodice, John; Kissinger, Jessica C.; Lawrence, Cris; Li, Wei; Pinney, Deborah F.; Pulman, Jane A.; Roos, David S.; Shanmugasundram, Achchuthan; Silva-Franco, Fatima; Steinbiss, Sascha; Stoeckert, Christian J.; Spruill, Drew; Wang, Haiming; Warrenfeltz, Susanne; Zheng, Jie

Future development efforts at EuPathDB will concentrate on expanding private analysis workspaces and better integration and support for host response to pathogen infection. The Galaxy toolshed contains many tools for data analysis. We expect to enhance our existing Galaxy workspace with new workflows such as alignment of resequencing reads and SNP calls or production of multiple sequence alignments and phylogenetic analyses. Critical to our expanded workspace will be the ability for users to fully integrate the results of their analyses into EuPathDB so that they can query, view, and share their results in the context of the publicly available data in EuPathDB.