Author: Chan, Joseph M.; Rabadan, Raul
Title: Quantifying Pathogen Surveillance Using Temporal Genomic Data Document date: 2013_1_29
ID: u2t1x89m_43
Snippet: Using the Javaplex software package at http://code.google.com/p /javaplex, we implemented a witness stream to filter different strains of influenza virus. Of N total sequences per strain, n sequences were chosen as landmarks by using the max-min selection algorithm, such that N/n Ï 3 (45) . Bar coding was performed at filtration Hamming distances at intervals of 20 from 0 to 100......
Document: Using the Javaplex software package at http://code.google.com/p /javaplex, we implemented a witness stream to filter different strains of influenza virus. Of N total sequences per strain, n sequences were chosen as landmarks by using the max-min selection algorithm, such that N/n Ï 3 (45) . Bar coding was performed at filtration Hamming distances at intervals of 20 from 0 to 100.
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