EuPathDB: the eukaryotic pathogen genomics database resource

Aurrecoechea, Cristina; Barreto, Ana; Basenko, Evelina Y.; Brestelli, John; Brunk, Brian P.; Cade, Shon; Crouch, Kathryn; Doherty, Ryan; Falke, Dave; Fischer, Steve; Gajria, Bindu; Harb, Omar S.; Heiges, Mark; Hertz-Fowler, Christiane; Hu, Sufen; Iodice, John; Kissinger, Jessica C.; Lawrence, Cris; Li, Wei; Pinney, Deborah F.; Pulman, Jane A.; Roos, David S.; Shanmugasundram, Achchuthan; Silva-Franco, Fatima; Steinbiss, Sascha; Stoeckert, Christian J.; Spruill, Drew; Wang, Haiming; Warrenfeltz, Susanne; Zheng, Jie

Categories. Searches, the experimental data sets they query, and genome browser tracks for visualization are now displayed with a common logic across the websites. The categories are based on the EMBRACE Data & Methods Ontology (EDAM) (31) , which relates biological concepts with bioinformatic analyses. The result is a logical, consistent menu structure from home page to gene page to genome browser. For example, the category names and order in the home page 'Search for Genes' (Figure 1B) is the same as the 'Contents' section of the gene page ( Figure 4C ).