Author: Seemann, Stefan E.; Gorodkin, Jan; Backofen, Rolf
Title: Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments Document date: 2008_10_4
ID: wtvfow2f_12
Snippet: We now recall the Pfold (33) model. In the following, a secondary structure is a set of base pairs that do not cross. Let A be a multiple alignment of the sequences s 1 . . . s n . Furthermore, let T be a given evolutionary tree and M be a prior model for the secondary structures. Thus the model provides a probability distribution on the structures, given the data (i.e. the alignment A) and the background information (i.e. the secondary structure.....
Document: We now recall the Pfold (33) model. In the following, a secondary structure is a set of base pairs that do not cross. Let A be a multiple alignment of the sequences s 1 . . . s n . Furthermore, let T be a given evolutionary tree and M be a prior model for the secondary structures. Thus the model provides a probability distribution on the structures, given the data (i.e. the alignment A) and the background information (i.e. the secondary structure background model M and the tree T):
Search related documents:
Co phrase search for related documents- alignment data and multiple alignment: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15
- alignment data and sequence multiple alignment: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
- base pair and multiple alignment: 1, 2
- base pair and prior model: 1
- base pair and probability distribution: 1, 2
- base pair and secondary structure: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21
- base pair and sequence multiple alignment: 1
- evolutionary tree and multiple alignment: 1, 2, 3
- evolutionary tree and sequence multiple alignment: 1, 2
- multiple alignment and probability distribution: 1
- multiple alignment and secondary structure: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
- multiple alignment and sequence multiple alignment: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85
- prior model and probability distribution: 1, 2, 3
- probability distribution and structure probability distribution: 1, 2
- secondary structure and sequence multiple alignment: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
Co phrase search for related documents, hyperlinks ordered by date