Selected article for: "accession number and ENSEMBL protein"
Author: Navratil, Vincent; de Chassey, Benoît; Meyniel, Laurène; Delmotte, Stéphane; Gautier, Christian; André, Patrice; Lotteau, Vincent; Rabourdin-Combe, Chantal
Title: VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus–host interaction networks
  • Document date: 2008_11_4
    • ID: x5lbstyr_19
    Snippet: Once logged-in, VirHostNet users can directly query the knowledge base by using a wide range of information concerning viral (e.g. NCBI protein name or accession number) or human proteins (e.g. ENSEMBL gene or protein accession number, NCBI gene name, REFSEQ protein accession number and UNIPROT primary and secondary accession numbers) ( Figure 4A ). AJAX technology was incorporated to control protein name and accession number availability in VirH.....
    Document: Once logged-in, VirHostNet users can directly query the knowledge base by using a wide range of information concerning viral (e.g. NCBI protein name or accession number) or human proteins (e.g. ENSEMBL gene or protein accession number, NCBI gene name, REFSEQ protein accession number and UNIPROT primary and secondary accession numbers) ( Figure 4A ). AJAX technology was incorporated to control protein name and accession number availability in VirHostNet. Another important feature of the interface is batch query. It allows in-depth analysis of interaction profiles with cellular and/or viral proteins from a list of proteins defined for instance in high-throughput studies (microarray, yeasttwo hybrid). A list of genes or proteins of interest can also be assessed by the mean of contextual information, such as taxonomical information, Gene Ontology terms, KEGG pathways and INTERPRO protein domains. These properties offer a unique access to protein-protein interaction networks: (i) associated to a specific virus taxon or (ii) underlying canonical sub-cellular localization, cellular functions and pathways.

    Search related documents:
    Co phrase search for related documents
    • accession number and high throughput: 1
    • accession number and human protein: 1, 2, 3
    • accession number NCBI protein and ENSEMBL gene: 1
    • accession number NCBI protein and human protein: 1
    • accession number protein ENSEMBL gene and ENSEMBL gene: 1
    • accession number protein ENSEMBL gene and human protein: 1
    • cellular function and Gene Ontology term: 1
    • cellular function and high throughput: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
    • cellular function and high throughput study: 1, 2
    • cellular function and human protein: 1, 2, 3, 4, 5, 6, 7
    • contextual information and depth analysis: 1
    • contextual information and Gene Ontology term: 1
    • contextual information and high throughput: 1
    • depth analysis and high throughput: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
    • depth analysis and human protein: 1, 2, 3, 4, 5, 6, 7, 8
    • ENSEMBL gene and high throughput: 1, 2
    • ENSEMBL gene and human protein: 1, 2
    • high throughput and human protein: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
    • high throughput study and human protein: 1, 2