Author: Valeria Lulla; Andrew E. Firth
Title: A hidden gene in astroviruses encodes a cell-permeabilizing protein involved in virus release Document date: 2019_6_6
ID: avq3zwmc_2
Snippet: ORF1b (RdRp) amino acid sequences were extracted and aligned, and a phylogenetic tree constructed (Fig. S1 ). We follow the genogroups defined in Yokoyama et al. 8 . Although the more-divergent CP sequences may provide a less robust phylogenetic analysis, we also constructed a CP-based phylogenetic tree to test for possible recombination (Fig. S2 ). At the level of genogroup the ORF1b and CP trees were consistent, although within genogroups there.....
Document: ORF1b (RdRp) amino acid sequences were extracted and aligned, and a phylogenetic tree constructed (Fig. S1 ). We follow the genogroups defined in Yokoyama et al. 8 . Although the more-divergent CP sequences may provide a less robust phylogenetic analysis, we also constructed a CP-based phylogenetic tree to test for possible recombination (Fig. S2 ). At the level of genogroup the ORF1b and CP trees were consistent, although within genogroups there were some differences between the topologies of the two trees. For simplicity, we used the ORF1b tree to define astrovirus clades for full-genome analyses.
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