Author: Jiao Chen; Jiayu Shang; Jianrong Wang; Yanni Sun
Title: A binning tool to reconstruct viral haplotypes from assembled contigs Document date: 2019_7_16
ID: 2basllfv_33
Snippet: As each contig can contain multiple sub-contigs, which could have different membership, the contig's membership is determined by the dominant membership of its sub-contigs. For example, if a sub-contig is not in the window of depth N , it is not an input to the clustering step and will not be clustered. This could happen when a region of a contig is common to multiple haplotypes. It is also possible that the sub-contigs of a contig are assigned t.....
Document: As each contig can contain multiple sub-contigs, which could have different membership, the contig's membership is determined by the dominant membership of its sub-contigs. For example, if a sub-contig is not in the window of depth N , it is not an input to the clustering step and will not be clustered. This could happen when a region of a contig is common to multiple haplotypes. It is also possible that the sub-contigs of a contig are assigned to different clusters, which could be caused by assembly errors.
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